OBO Foundry dashboard analysis¶

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/tmp/ipykernel_603/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax    4
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 4 7380.50 9903.248440 372.0 578.25 3820.5 10622.75 21509.0
Declaration 4 680.00 839.537174 115.0 167.50 346.0 858.50 1913.0
SubClassOf 4 3664.00 6053.059392 148.0 155.50 914.0 4422.50 12680.0
SubObjectPropertyOf 3 6.00 4.320494 0.0 4.50 7.0 8.50 10.0
InverseObjectProperties 3 5.75 6.020797 0.0 2.25 4.5 8.00 14.0
DisjointClasses 3 6.75 9.639329 0.0 1.50 3.0 8.25 21.0
EquivalentClasses 2 4.25 4.924429 0.0 0.00 4.0 8.25 9.0
FunctionalObjectProperty 2 0.50 0.577350 0.0 0.00 0.5 1.00 1.0
ObjectPropertyDomain 2 4.00 6.733003 0.0 0.00 1.0 5.00 14.0
ObjectPropertyRange 2 4.00 7.348469 0.0 0.00 0.5 4.50 15.0
SubAnnotationPropertyOf 2 7.25 8.616844 0.0 0.00 6.0 13.25 17.0
TransitiveObjectProperty 2 2.50 3.000000 0.0 0.00 2.0 4.50 6.0
Rule 1 1.00 2.000000 0.0 0.00 0.0 1.00 4.0
ClassAssertion 1 4.75 9.500000 0.0 0.00 0.0 4.75 19.0
IrrefexiveObjectProperty 1 0.25 0.500000 0.0 0.00 0.0 0.25 1.0
InverseFunctionalObjectProperty 1 0.25 0.500000 0.0 0.00 0.0 0.25 1.0
DifferentIndividuals 1 0.50 1.000000 0.0 0.00 0.0 0.50 2.0
SubDataPropertyOf 1 0.25 0.500000 0.0 0.00 0.0 0.25 1.0
AnnotationPropertyRangeOf 1 0.25 0.500000 0.0 0.00 0.0 0.25 1.0
SymmetricObjectProperty 1 0.25 0.500000 0.0 0.00 0.0 0.25 1.0
DataPropertyRange 1 2.50 5.000000 0.0 0.00 0.0 2.50 10.0
ReflexiveObjectProperty 1 0.50 1.000000 0.0 0.00 0.0 0.50 2.0
FunctionalDataProperty 1 0.50 1.000000 0.0 0.00 0.0 0.50 2.0
SubPropertyChainOf 1 0.50 1.000000 0.0 0.00 0.0 0.50 2.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 4 7749.25 12478.825836 432.0 444.0 2124.5 9429.75 26316.0
ObjectSomeValuesFrom 3 2577.75 4357.812171 0.0 51.0 623.5 3150.25 9064.0
ObjectIntersectionOf 2 1.00 1.154701 0.0 0.0 1.0 2.00 2.0
DataSomeValuesFrom 1 2.75 5.500000 0.0 0.0 0.0 2.75 11.0
ObjectUnionOf 1 0.50 1.000000 0.0 0.0 0.0 0.50 2.0
DataHasValue 1 232.00 464.000000 0.0 0.0 0.0 232.00 928.0
ObjectComplementOf 1 0.50 1.000000 0.0 0.0 0.0 0.50 2.0
ObjectOneOf 1 0.75 1.500000 0.0 0.0 0.0 0.75 3.0

OBO Score (Experimental)

ontology score score_dash score_impact
2 gndo 0.400 0.800 0.0
0 afpo 0.400 0.800 0.0
3 occo 0.374 0.749 0.0
1 carolio 0.371 0.742 0.0

OBO Score Summary

count mean std min 25% 50% 75% max
score 4.0 0.38625 0.015924 0.371 0.37325 0.3870 0.4 0.4
score_dash 4.0 0.77275 0.031595 0.742 0.74725 0.7745 0.8 0.8
score_impact 4.0 0.00000 0.000000 0.000 0.00000 0.0000 0.0 0.0

OBO dependency graph